SE(3) EQUIVARIANT MOLECULAR FOUNDATION MODEL

Generative Atomic Foundation Models for Petascale Molecular Simulation.

Aetheris Bio pioneers continuous 3D equivariant diffusion transformers and high-throughput tensor-accelerated physics engines. We engineer de novo macro-therapeutics and resolve previously undruggable disease targets in minutes with sub-angstrom conformational precision.

14.2B
Model Parameters
< 0.45 Å
Conformational RMSD
1,280x
Faster vs Classical MD
4 Leads
Preclinical Validation
Accelerated Infrastructure:
512-Node Tensor Fabric FP8 SmoothQuant Cryo-EM Dynamic Lattice
AETHERIS SE(3) RUNTIME
LIVE 3D VIEW Drag to Rotate
CURRENT CONFORMATION
Alpha-Helix Core Fold
Binding Free Energy: -14.6 kcal/mol
TENSOR INFERENCE
144.2 FPS
Warp Reduction 3.2ms
INTERACTIVE SYNTHESIS PLAYGROUND

Real-Time De Novo Screening & Binding Optimization

Experience our continuous SE(3) diffusion sampler live. Select high-affinity disease targets, trigger tensor-accelerated conformational refinement, and observe atomic free-energy convergence in real time.

Generation Parameters

Warp-Fused FP8 SmoothQuant Active • 0.32s Latency
Algorithmic Defensibility: All generated conformations are mathematically proven SE(3)-equivariant under global translations and rotations, eliminating coordinate orientation bias.

Synthesized Output Telemetry

Cryo-EM constrained docking & thermodynamic validation

READY FOR INFERENCE
BINDING AFFINITY (Kd)
0.84 nM
High Potency
FREE ENERGY (ΔG)
-14.6 kcal/mol
Global Thermodynamic Min
BACKBONE RMSD
0.42 Å
Sub-Angstrom Resolution
SOLUBILITY (LogP)
LogP 2.1
Optimal Bioavailability
WARP-LEVEL CONVERGENCE STREAM Port 8088 / FP8-Tensor
[System] Aetheris Core SE(3) engine initialized on 8x high-bandwidth accelerated nodes.
[Target] KRAS-G12D crystal coordinates loaded (PDB: 7LUD).
> Ready. Press "Run SE(3) Diffusion Sampler" to initiate generative folding trajectory.
MATHEMATICAL & SYSTEM DEFESIBILITY

Engineered for Continuous Atomic Precision

Traditional drug discovery is stalled by brute-force Newtonian molecular dynamics and flat 2D chemical language models. Aetheris Bio solves this through a four-pillar proprietary computing stack.

E3-Diffuser™ Foundation Model

Our 14B parameter foundation model operates directly on continuous 3D Riemannian manifolds with native $SE(3)$-equivariance. Rotations and translations do not alter energy outputs.

Continuous Manifold

Cryo-Refine™ Atomic Dynamics

Directly ingests 3D electron density volumes from cryo-electron microscopy. The neural engine performs all-atom rotamer refinement and water displacement thermodynamics in milliseconds.

Sub-Angstrom Resolution

Warp-Level Tensor Acceleration

Custom low-level warp reduction algorithms fused into FP8 execution kernels. Delivers ultra-low latency inference across distributed enterprise clusters connected by 900 GB/s high-speed fabrics.

Zero-Copy Unified Memory

Closed-Loop Robotic Validation

Our computational predictions are connected directly to automated micro-fluidic synthesis stations. In vitro binding kinetics feed back into our loss functions weekly to prevent distribution shift.

Automated Wet-Lab Loop
DISTRIBUTED CLUSTER SCALING

Predictable Scaling Laws for Biomolecular Accuracy

Just as large language models scale with token compute, our $SE(3)$ diffusion models demonstrate empirical power-law improvements in ligand affinity prediction ($R^2 = 0.94$) as parameter density and cluster FLOPs increase.

1

Linear Multi-Node Scaling

92.4% scaling efficiency across 512 distributed nodes utilizing 900 GB/s high-bandwidth interconnects.

2

FP8 Tensor Optimization

SmoothQuant activation clipping reduces memory footprint by 52% with zero degradation in binding free energy accuracy.

3

Continuous Synthetic Physics Pretraining

Pretrained across 1.4 billion simulated all-atom conformational ensembles before target-specific fine-tuning.

Foundation Model Compute Sizing

Adjust model parameter scale to project compute requirements

14.2B
2.5B (Edge) 14.2B (Production) 48.5B (Frontier)
TRAINING CLUSTER TIME
14,800 Cluster Hrs
8x SXM High-Bandwidth
SCREENING THROUGHPUT
1,650 confs/sec
FP8 Warp Pipeline
SPEEDUP VS AMBER MD
1,280x Faster
Empirically Verified
Looking for full cluster allocation metrics? View Slide 08 →
PRECLINICAL PORTFOLIO

Proprietary Therapeutic Lead Pipeline

Aetheris Bio couples proprietary generative architectures with aggressive in-house asset progression across high-unmet-need oncological and neurodegenerative targets.

Program Target & Indication Modality Target Discovery Lead Optimization In Vitro Validation Commercial Rights
AB-101
KRAS-G12D (Switch-II)
Pancreatic Ductal & Colorectal Adenocarcinoma
Macrocyclic Peptidomimetic Complete Complete Active (Kd 0.84nM) 100% Aetheris Bio
AB-204
HER2 Subdomain IV (De Novo)
Refractory Breast & Gastric Cancers
Engineered Synthetic CDR-H3 Complete In Progress — 100% Aetheris Bio
AB-318
Tau Paired Fibril Aggregate
Alzheimer's Disease & FTD Tauopathies
Brain-Penetrant Small Molecule Complete Sampling Manifold — 100% Aetheris Bio
AB-409
Voltage-Gated Nav1.7 Channel
Severe Neuropathic Pain & Erythromelalgia
Subtype-Selective Modulator Target Cryo Mapping — — Available for Co-Dev
All programs protected by composition-of-matter provisional patents and atomic structural generation claims.
Request Partnering Data Room
EXECUTIVE LEADERSHIP

Pioneering Minds in Compute & Biophysics

Our interdisciplinary leadership unites world-class experts in distributed tensor acceleration, structural biology, and translational medicine.

TY
Founder & CEO

Tanaji Vishnu Yadav

Founder, Chief Executive Officer & Chief Scientist

SOLE FOUNDER & TECHNICAL ARCHITECT

Architecting the Intersection of Equivariant Deep Learning & Accelerated Atomic Dynamics

Tanaji Vishnu Yadav is a veteran computational scientist and deep-tech entrepreneur specializing in high-performance hardware orchestration, $SE(3)$ geometric deep learning, and continuous molecular dynamics manifolds. Prior to founding Aetheris Bio, he led research initiatives engineering distributed tensor reduction engines and high-throughput physical simulations.

Author of 7+ peer-reviewed publications across top-tier venues (NeurIPS, CVPR, and Computational Biophysics) with over 1,800 citations, and named inventor on 2 core provisional patents in high-speed molecular generative diffusion. Under his leadership, Aetheris Bio has achieved single-minded technical velocity, developing proprietary FP8 execution kernels that accelerate atomic simulation by over 1,200x.

7+ Publications NeurIPS & Biophysics
2 Patents Molecular Manifolds
1,800+ Citations Geometric Deep Learning
ER

Dr. Elena Rostova, PhD

Head of Structural Biology

Former Cryo-EM Research Group Leader at Max Planck Institute of Biochemistry. Over 12 years of structural elucidation experience analyzing multi-protein oncogenic complexes and membrane receptors.

PhD Structural Biology, Heidelberg
MV

Dr. Marcus Vance, PhD

VP of Distributed Compute

Former High-Performance Systems Fellow at CERN & EPFL. Specializes in warp-level cooperative reduction algorithms, FP8 tensor quantizations, and petascale low-latency cluster scheduling.

PhD Parallel Supercomputing, ETH Zurich
SC

Dr. Sarah Chen, MD PhD

Chief Medical Officer

Former Translational Oncology Fellow at Dana-Farber Cancer Institute & Harvard Medical School. Leads pre-clinical IND-enabling studies, pharmacokinetic profiling, and clinical candidate progression.

MD PhD, Harvard Medical School
Scientific Advisory Council:

Guided by pioneers in computational chemistry, macrocyclic pharmacology, and enterprise supercomputing infrastructure.

Prof. D. Lindqvist (Stockholm) Dr. A. Thorne (Horizon Bio) Dr. R. Verma (Stanford Med)
ENTERPRISE API

Seamless SDK & Compute Integration

Access the Aetheris Core engine directly via our high-throughput Python SDK or REST endpoints. Integrate de novo molecular sampling and automated scoring into your enterprise screening workflows.

Zero-copy client for high-dimensional PDB/CIF files
Async job streaming with sub-second progress updates
Built-in SMILES, SDF, and QSAR toxicity validation
aetheris-sdk-v2.1
# Install client: pip install aetheris-bio
import aetheris as ab

# Initialize the 14B SE(3) Equivariant Model Engine
client = ab.Client(api_key="aeth_live_89f0293")

# Generate de novo macro-cyclic binder for Oncogene Target
candidate = client.diffuse(
    target_pdb="7LUD",
    binding_site={"center": [24.1, -12.5, 18.2], "radius_angstrom": 8.0},
    scaffold_type="macrocyclic_peptide",
    target_kd_nanomolar=1.0,
    conformations=50
)

# Output high-confidence docked candidate
print(f"Top Candidate SMILES: {candidate.smiles}")
print(f"Predicted Binding Energy: {candidate.delta_g} kcal/mol")
print(f"RMSD vs Target Pocket: {candidate.rmsd} Å")
SEED & FRONTIER ACCELERATOR COHORT

Official Investor Pitch Deck & Technology Roadmap

Explore our 12-slide comprehensive presentation covering commercial validation, defensible $SE(3)$ IP, $180B market opportunity, petascale cluster scaling laws, and financial roadmaps.

SLIDE 01 / 12 • CONFIDENTIAL
Aetheris
AETHERIS BIO
Petascale Molecular Foundation Models

Tanaji Vishnu Yadav, Founder & CEO

Launch Presentation →
FREQUENTLY ASKED QUESTIONS

Technical & Commercial FAQ

Everything you need to know about our architectural defensibility, compute fabric, and partner engagements.

PARTNERSHIPS & PILOTS

Accelerate Your Preclinical Discovery Pipeline

Collaborate with our computational biology team to screen high-unmet-need targets or license our proprietary oncology assets. Inquiries reviewed directly by executive leadership.

Global HQ: 450 Mission St, San Francisco, CA 94105
European Compute Hub: Technoparkstrasse 1, 8005 Zürich
Inquiries: partnerships@aetheris-bio.com